YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srt-52
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLLIYGSV QANPLYNCSA KPASQWTDEL GTQRIFLGVI LIIFGIIVEI LYVPCLGAIY  60
   61 KKKLLQHSCY KIMFLLGITD MLTTCTATIL SGYLLTVGAV FCTYPELIYV AGCFALGGWV 120
  121 SSCAWTLLLV INRISDMIAP RISDFLFSGN RTWIVALIPI PYTLSVMFFT PAIIFNSTVM 180
  181 AWIGDPLIYE ERAQDYYNPI QNLNNVVFIS GTIVLYGAYC FFMAKKTMGY KVSAGKNVFI 240
  241 QSTLICSINC SSALVYSSMM FHKPNEYIVL FGELAWSFVH GCPAIIYLTM NKTVRQEVLR 300
  301 WIRRKNPAVQ DSDKYTANSL EHRSRNTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.97
Transmembrane Helix	35	56	0.93
Cytoplasmic	57	71	0.83
Transmembrane Helix	72	95	0.86
Non-Cytoplasmic	96	107	0.77
Transmembrane Helix	108	131	0.94
Cytoplasmic	132	151	0.93
Transmembrane Helix	152	174	0.93
Non-Cytoplasmic	175	205	0.90
Transmembrane Helix	206	223	0.97
Cytoplasmic	224	237	0.85
Transmembrane Helix	238	260	0.88
Non-Cytoplasmic	261	268	0.87
Transmembrane Helix	269	291	0.83
Cytoplasmic	292	328	0.94