YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40163
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTTRSRSKN NRAADKDRSK ERYAYRPRST FEESDALVGF KTIDHYLQYD CLLTREELHR  60
   61 LDEHVYSAVD TSWLDELCMK KFWEAVVLYY PLWVAPNLLT LIGLIVNLTT VLVLSFYCPT 120
  121 ATETAPAWAY FLAAFGLFVY QTLDATDGKQ ARRIGASSPL GELFDHGCDS ASQVFVTLNV 180
  181 CYALQLGSVR CGVFIACLIS VSLFYTAHWS TYCTGQLRFA RFDVTEAQWS IISMLLCTSL 240
  241 FGPKLWSVGI FGYALKHLLL ACVGLGTIYQ ALGYLSVIFT DGVGKNGSTV AGTSVLFPAC 300
  301 PLLAVIVPYC MIYSKSASGV YDDLIVIFVL QFGAVAAKAT NRLIVAHMSR SELSLWDWIY 360
  361 MGPIALMINQ YYDIKINEPT LLKYTTVYVY ASLLVYCLFI TRQICDHMGI YCFKVTAPRA 420
  421 GSSK

Type	Start	End	Confidence
Cytoplasmic	1	88	0.97
Transmembrane Helix	89	114	0.79
Non-Cytoplasmic	115	124	0.75
Transmembrane Helix	125	143	0.91
Cytoplasmic	144	187	0.87
Transmembrane Helix	188	209	0.85
Non-Cytoplasmic	210	226	0.79
Transmembrane Helix	227	248	0.83
Cytoplasmic	249	256	0.62
Transmembrane Helix	257	278	0.88
Non-Cytoplasmic	279	289	0.69
Transmembrane Helix	290	312	0.87
Cytoplasmic	313	323	0.60
Transmembrane Helix	324	340	0.74
Non-Cytoplasmic	341	380	0.38
Transmembrane Helix	381	400	0.61
Cytoplasmic	401	424	0.58