YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-32
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGGALLSSG LCRFSELTPG QFGLTKQLVF RLALPHITLL VVSILYAVFG GWMLTLIKYS  60
   61 QQTTHQAIMF DQTRQNFAKR LALIGNKEEF ESIVDELVEK TYDFYTMEDG HRWQEAAFNA 120
  121 NPLTNFTSNL FFAATTLTSI GYGIDAPESL IGRVFCLVYL FFGIPLYLIT IADMAKFCTE 180
  181 LMNRTYTEII KYKYRVKRRY KRWKSGRIRR ESMKVGQVII AGGEDEVAEF LWTHLEHAQF 240
  241 VEVPFLLVIG ILLLYIGLSS WIISWVENWN MMDGFYFVMM SVLTIGFGDL VPRNEIFAVP 300
  301 ILFIILAGLV LTTTCIDVVG AYYIDRLHFF GRRLDDDPLS WLKEVQQRRI EAMKKEAMRK 360
  361 LFETVTALHH IRLTAFKQLT QNYDEHLRGK APDPPRHLIA SHATADSVML RWSAPIYVDE 420
  421 GKRYWYTITY KPRTPQRRNN VVAVDFINKD RYLVTGLKSF TLYEFSVYVT TRYGQSVPIK 480
  481 VQEYTEPCTV PQSVRIDAIS DETATISWRA PKMNNGPESY VIQFVQEPAP QFVYWCKYKV 540
  541 GSSTRFTLTD LHADTRYIIC VTAEHNHGLA AMSKSMRFRT KKWWGDEDST CLRIPGTSHR 600
  601 LSIASAISTL TALR

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.47
Transmembrane Helix	32	56	0.84
Cytoplasmic	57	121	0.49
Transmembrane Helix	122	144	0.69
Non-Cytoplasmic	145	149	0.56
Transmembrane Helix	150	172	0.87
Cytoplasmic	173	239	0.60
Transmembrane Helix	240	265	0.83
Non-Cytoplasmic	266	271	0.54
Transmembrane Helix	272	291	0.90
Cytoplasmic	292	300	0.47
Transmembrane Helix	301	324	0.93
Non-Cytoplasmic	325	614	0.59