YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60685083
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.96
Transmembrane Helix	68	89	0.83
Non-Cytoplasmic	90	104	0.75
Transmembrane Helix	105	125	0.71
Cytoplasmic	126	130	0.69
Transmembrane Helix	131	164	0.65
Non-Cytoplasmic	165	192	0.73
Transmembrane Helix	193	215	0.85
Cytoplasmic	216	222	0.66
Transmembrane Helix	223	243	0.75
Non-Cytoplasmic	244	273	0.81
Transmembrane Helix	274	295	0.77
Cytoplasmic	296	310	0.94
Transmembrane Helix	311	330	0.92
Non-Cytoplasmic	331	361	0.90
Transmembrane Helix	362	381	0.83
Cytoplasmic	382	397	0.81
Transmembrane Helix	398	420	0.77
Non-Cytoplasmic	421	453	0.68
Transmembrane Helix	454	476	0.84
Cytoplasmic	477	491	0.88
Transmembrane Helix	492	519	0.86
Non-Cytoplasmic	520	737	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIPPSTPST PTMIHVEEEE YDQLRSFYAK KRRAPMNQVE YDEKYGYQKR LKDGGKFKKR  60
   61 STKVASRYYV PFTSVTNFKI FLLNLFPIFG WLPKYDWKNS LTSDVVGGIT VGVLQIPQGI 120
  121 AYAILSRQDP IVGLYTSIYP VFLYIFFGTS KHASLGTFAV VALMTGLAVE REAFIPSDNL 180
  181 NSTLLPGDEA LPSPIEVSCA LVLGVGLIQF LMGVFRLQFL TTYLSDQLIA GFTTGSAVHV 240
  241 LVSQFKELFG LRGLVKHSGP GYLIRNVYDT VTNLPKANFM CCAISLATMI LLHCGKEYIN 300
  301 PIMKRKMKSN IPIPWELVAV IISTIFVALI DANELYNVKI VNKIPTGLPE LSLPNPNLIP 360
  361 RVLPDAISIA VVVVAVHLSL SKMLAKKYEY EIDAGQELYA LSFTAIGGSF FPTFPTSIGL 420
  421 GRTMVGVESG VKTQVATFFS CLFVLSVSLY FGRFLETLPM CVLSAIIVIA LKSMLWKLRD 480
  481 LKGIWKLSKI DCCIWMVAFF ATVLVDVSEG LLIAIFFALF TTILREQYPK WHLLANVKDT 540
  541 DEFSDTQQYQ ETIFYKGICI FKFDAPLLFH NVECFKKCIE KVYDEWKKSS EFNFVKEPNA 600
  601 GKGSKFTFEG MHRIAPITEI PLHPGINRDP ILPRHFVIDC SGFTFIDLMG VSALKEVFSD 660
  661 LRKKRVQVYF ASTKVPVREM FEKCSFFDFV SKENFYPTLR DATGIARLRQ TEFGSLDTTS 720
  721 IPEFDEISNV TNNYPTQ