YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37877
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSVSKSNL NVAKIAKQQR LQAEENAAVQ AASMERRVAF RPPPIGESRS TTITHDSGSN  60
   61 ADTYMRLNVG GKSYYVRAEL YTSEWTRMHE LLDSSHEERL KMVDGFDSKT GEYYLERNAK 120
  121 LTDHVMDFFV TGSLHKPQNV CVERFKEELE YWKIKPDQLS TCCQIPSEHH VRKLSRGTSF 180
  181 NEDDYVTDFD GACFAGPRLA MWKFLEDPQS SVFAAVFALL SVFFVFASVV GLILGSMPEF 240
  241 QADSSNAATY HVMHVRSRPN DYGNKFGNDD DVAPNELLKD FVYKPTDSPN LPLTILEYIC 300
  301 IGWFTFEYLV RFTIYPRKRQ FVKKTLNIID LSTILPFYLE ICLPLFGVES RLKEFTGAML 360
  361 VVRVLRVLRM ARVFKLARYS TSLQTFGHTL QSSITELSML SMFLITGIVF FSTIMYYLEK 420
  421 DEPHTDFYSI PAGCWWCVVT MATVGYGDAK PVTTLGKLVA TSTSICGIIV LAFPISMIVE 480
  481 KFATAQQRAI EDQQIQQAQM SAVANNALLR RFPTRRKVRR NTTVSVNNI

Type	Start	End	Confidence
Cytoplasmic	1	210	0.88
Transmembrane Helix	211	234	0.92
Non-Cytoplasmic	235	293	0.85
Transmembrane Helix	294	315	0.74
Cytoplasmic	316	325	0.91
Transmembrane Helix	326	348	0.58
Non-Cytoplasmic	349	396	0.58
Transmembrane Helix	397	418	0.91
Cytoplasmic	419	426	0.60
Transmembrane Helix	427	447	0.90
Non-Cytoplasmic	448	457	0.53
Transmembrane Helix	458	479	0.90
Cytoplasmic	480	529	0.69