YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE43784
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAKVKDQTS VEMHDIPKNQ AHPEDDKPHS WKDALFGRRA RKYAFVFIVA FLAVLTVKDV  60
   61 FDLFEEYFDY PKESDINIVF NESMTMPNVT FCMSRQQAWS HFKLNLTAPA DEWDAVVDEN 120
  121 LANMTDHDAF MKTPWDYRLV MEAYDMIATY SSLERETTAH GSARSIHVFK NAPRLAAKRK 180
  181 TFKKWRDILD SRGITFDEFT QKTGIEVLRR SMQRFRRRTF DDDETVIKTK LRISWISQMQ 240
  241 ICFQPEFDQD NFKTIDDQGV FFDMLLSHNA ENTEGQKIDC MSVDFHGRPS SLNRFMEGKG 300
  301 RSRDGYVDEV CLGQRHEVTA HVTALYQMLE NDEQGTRCRD VEDGEDSEFN CRSRCRMEMI 360
  361 RDACHCTPLS LSYLAKKEDM EIFPLCDYTQ CTVDVQKGNY SDTECANKCF PDCRQIRFEV 420
  421 DHSVKGRMLR PDLTLVELSW GPFEYLTMEQ QWKYSATSFI AALGGSIGMW LGLSILSLIQ 480
  481 LVTYSYTYFT KKIVNERILK KGNTFDKKDE GDEDGDFTID NGTERKKMSL AENPFAEFFP 540
  541 AGSPEQPKKM GSKPNSRQAS LDKDGGNAQG YSSNPRA

Type	Start	End	Confidence
Cytoplasmic	1	42	0.60
Transmembrane Helix	43	57	0.56
Non-Cytoplasmic	58	458	0.93
Transmembrane Helix	459	482	0.78
Cytoplasmic	483	577	0.83