YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	spe-10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWYSKIYVA VREYRAKHKI TGWILTRCLN VLLFIQLILL WWSLYMYVTV TIGYYVQSTI  60
   61 QATIYLIVGS FLFVMSMWSL AKTLFTRVGR VPERYRPSKE LEDRLKAVTP MEKNRYVVEK 120
  121 STPEQLAQQN TILEEMCTYC KVVVAECDQV GRLKYCYECG HIKPDRARHC SSCGKCCIKY 180
  181 DHHCPWINMC VTHVNYKYFL LYIIYTSFLV YWYLLTSLEG AVRYFINQQW TDELGKFLFY 240
  241 LFSFIVGGVF GYYPLGELII FHYQLISLNE TTVEQTKPAL LRFDNAADYN MGKYNNFQSV 300
  301 FGWGLWLCPI DSSTQDGLHF DIRYVNTQQR NRFVRIEEEP SSTQSSQSSI Q

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	44	0.88
Non-Cytoplasmic	45	61	0.85
Transmembrane Helix	62	81	0.93
Cytoplasmic	82	197	0.97
Transmembrane Helix	198	215	0.93
Non-Cytoplasmic	216	236	0.85
Transmembrane Helix	237	256	0.94
Cytoplasmic	257	351	0.95