YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE42524
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLCRKLWKY LLGLIILYVT VFLNLDRIRS YSTDAPIFEV TNSFSSKSHL SKDGSTNQFY  60
   61 HAQFKDQNHT YQFITVPKKQ CSNNTKLQIT ILSTAGNFDI RQAIRETWAN PNNSEHVANN 120
  121 DVRISFIISK TSNEFLNFAL QKEIEKFDDM IVTDLYESYE LLILKVHAIL SYKQSHCQLA 180
  181 DFQLKIDDDM AVDMDGLYRS LEDKKQASIN GISGIIWKNS PPVREKKHRW YVPKTLYSEK 240
  241 FFPPYIDGPI YLIGKNAVPR MLEEAKNYNQ WIIEDVFWTG VIGKALKIKQ INWANHLLRY 300
  301 VIELIPSRLK CSKGGVPLIY AVHNMKGPQM IHDGYQKLKG VKCK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	24	0.60
Non-Cytoplasmic	25	344	0.98