YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-39
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLFILFLF FGNVSSFNFL VFCPLFAHSH SKFFATIADS LTDAGHNVTF FTPTIVEKYR  60
   61 NVSYTKSTKD VVHMKPSKKL KEYGEQMSTG DFVRYWTEDS TATEIIPVVR IFQKMYNEQG 120
  121 TVMKDNVGIL NELKKRKFDV IIFEAYIYSA YPLMDYLEIP TFIPSVSVAH DTSLAIEIGE 180
  181 PVMPSVVSDC LSPFGDKLSI TERAFNAFMV PYFDFMIGYP THRSFKPPYN PIDIRSIVPE 240
  241 ASFVFLNSNP FVDFPRPTLT KTIQIGGISV DSNELRSQKL DETWSEILKL REKTMLVSFG 300
  301 SMLYSKDMPF KNKIALKNAM EKFKNVTFIW KYEDDSSDEF AKGIENIHFA KWVPQTALLA 360
  361 DSRLSAFLTH AGLGSINELS YLGKPAILCP QLFDQMRNAK MLVRHNGSIE LSKYDLGDSE 420
  421 KIVNAFQAIL FDSSYAKNAL KLAEQLENQP IKPKEMMVKH AEFAARFGRL PSLDPYSRKM 480
  481 TFIEYFLIDV AAISMVVLIA VVFVITKMFK ILCNKTSVKG KIE

Type	Start	End	Confidence
Signal Peptide	1	16	0.81
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	484	0.98
Transmembrane Helix	485	506	0.91
Cytoplasmic	507	523	0.90