YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE42261
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPSAPPDE AESTIRSPDL PFVSSIVGGL FAGRAIVVSG MVLPGFASDR KRFQIDLCCG  60
   61 LLIDGDHMDN KALHFNPRFD AKTGWFSGPG DDKLVINSFV SGRWGNEERF DNPFKEGEPF 120
  121 QIRIMVFEKY FKISASGKHM CDFPHRVPVE SIRTISINGN IRVDYVEFHP PIGIGADGKP 180
  181 TLVAPTPKQE VITKIDKPNV PFELPLPPGG FVSPQSARFT ITPFLSSERF TINLKSKGEF 240
  241 LFHFRVDMPN QAQKIKPHVI RNSSKNGVKW LTEERTFGTF PFHKGITHDI VFTAYGKSVT 300
  301 VDVDGAPFVK FVYRDGDDPV NVDQITVVGD VLIHRFEHKG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.56
Transmembrane Helix	21	43	0.66
Non-Cytoplasmic	44	340	0.81