YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lips-5
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLVPSILL ISTVLSQDIP EYGPISANFD AWLDRNGYGK YDYARLDLGT AGSFGGMSSD  60
   61 MEYFDTSKDP VIFFHGNSDA ALTANNFSTG WTTTVQYFLN QGYTLGHLYG TSWGNTNTTA 120
  121 AVERDHDCVT VFRLRKFVEA VMDYTGAKQI NIISHSMGVT LARKVILGGY INADDGSCNI 180
  181 GKPLGNKVRV ILGIAGANFG LCACVGHWLG VTWPTCNDDN GLWPGETCYP NPMNGQCAAS 240
  241 PLPSPCNGLT YSKFLMDLNN SRFKPAQHIF SMWSMGDDLI GDGNMVWGRP TSEIPFSDSN 300
  301 KIYKNYTHME TKLNTAADQF HIITQLTIP

Type	Start	End	Confidence
Signal Peptide	1	16	0.97
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	329	0.98