YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abt-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.08
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	143	0.85
Transmembrane Helix	144	163	0.68
Non-Cytoplasmic	164	188	0.57
Transmembrane Helix	189	211	0.91
Cytoplasmic	212	218	0.46
Transmembrane Helix	219	241	0.89
Non-Cytoplasmic	242	249	0.47
Transmembrane Helix	250	272	0.84
Cytoplasmic	273	288	0.48
Transmembrane Helix	289	312	0.78
Non-Cytoplasmic	313	386	0.53
Transmembrane Helix	387	401	0.08
Cytoplasmic	402	741	0.55
Transmembrane Helix	742	765	0.84
Non-Cytoplasmic	766	903	0.61
Transmembrane Helix	904	927	0.86
Cytoplasmic	928	943	0.62
Transmembrane Helix	944	969	0.87
Non-Cytoplasmic	970	984	0.54
Transmembrane Helix	985	1005	0.93
Cytoplasmic	1006	1012	0.59
Transmembrane Helix	1013	1034	0.88
Non-Cytoplasmic	1035	1047	0.55
Transmembrane Helix	1048	1068	0.67
Cytoplasmic	1069	1080	0.79
Transmembrane Helix	1081	1103	0.89
Non-Cytoplasmic	1104	1479	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVCIPETVV DYRFSTVIDA IHLTHLDYPH LEFTKKLEKA KNKLEDGEVD FLVLFKTLIE  60
   61 TGKKIEYKII SEQGVFDKHC IQCDVHRKKT WGNAVEAQVV VNRFLYWLVK SRGFNKRSPH 120
  121 WQLSNVYVKH SGNDPMFLKR QSDLFLLWIL LLPICSRLID LWNNDRSSGY YNMFLSLHAR 180
  181 RFHYFIAKFV FWYGIALIIS LIVFIVNVLV VPAVFCSTYL QFVVCYAACI ISFAIFLATT 240
  241 FPGSPLFAKI VGFLSMVAGE FGFGTVYHGI GFFQLCVRHF GKSEFDGPWI DAVCTLCMTG 300
  301 NCVLLITVSI YFDTYFCLFT MEPLAFYFPL EKDYWMPEAR SPQLDTFFVK QIILLKPGRS 360
  361 EITVKKAHDE ILPAKTSTGS KYIPPTPIVK GVPLVVLYGI CKRIENHWRV KQVSLTVHLG 420
  421 EVVTLYGHHG CGSGEILSII AGQMKPEYGE VMMEQSQRPL MISKTTDVPN VNYLNVIQYL 480
  481 RLISKMRGVS ASTSHIDEML EELDLIKVKN RSLDLLSTTQ KERLRIAAVF VGQPDLVLID 540
  541 FPTMECLPEW KFMVFRFIEK RKEKRSIIVS SYDPEETEAI SDKVVLMSEG YVVLNGSCEA 600
  601 FKHSINSVFE IRIWPNNRFT DEQIKGMMKT LTLGDNQMKN DARFFETPNG KIRVTLPILY 660
  661 RRSIPLILRE LDAVHEKFRI EFYELGKPNI HDIYANACYE HQQLDPLSTF DQLRDHYTKQ 720
  721 QPLNKKTYFF KNMIHIFKDG RFLIETAAVV GLFLILTVII LLSYHSVESD SHQTREISLT 780
  781 SYESPITIYC DECEKEVIEG VTFEKKSRVL QLENNQAVLY WKDTAKADKE LITVSRGDAL 840
  841 FTMIVQNFAV SQMISKITGK HPQIKLFLES ENVRTATEIS GFSTVFNDIS SSKAAMILTE 900
  901 SYSLMYITAV FQMFVYTFSV VLPLRLVSTN MGPQSMILPW PRYVYFGFIY VFQLVVFLVI 960
  961 AIILGFAVLS MGFFATNTTS CYLRFLSAWF LSYASTLPLI YFLVFNIQNT KSVIPIILAI1020
 1021 SSLSVTFPNL VASFSAENQV SLQSLIQFVS WSCMLNPPSS LQVLAAFLNA GESLEKNSGT1080
 1081 ITSLILFCGA QFWIIVIFVL VIFQPGFSYI QQYWFKSSTV LYSSFERGTT LKPGARIKNS1140
 1141 YIFVTNPLGT MEDAQDKGAS GNIPNRPAAG TEPVQKPTSD YIAGSSMSID DMSYITNYEE1200
 1201 NLVEKMATMT SWNDKQEVPV DNSATFLMGD QTKLKSALLT TIAKINKNEH IAFVPIVENI1260
 1261 STIYTPFELL ENAAYCNGFE ITDDHISYLL DAFDLKEHAN TQIKLLPCID RRILMLLAKL1320
 1321 VIKPNIVIID QLEMFLPHSK MMTVWSFCAR LRKNGLGIIY TSHHSGFAEH TATCCAHMYK1380
 1381 GQFVRNLLPT SIKAKCTVLE VVPKTASDPK VLLHMLQKEM EESVKLPSTS RNITLAMYKD1440
 1441 GVETIEKILE LLRMLSPQIK RYSLRSGNCD EFLASAFGK