YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40525
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSLKLDEL LSLPQVHVKD IKSLTDKLQN IVSGGADQLM VISDFDFTLS RFADKSGNRC  60
   61 SSCYCVFDSA VGTNNPEWCR KFVGLYHKYG PIEHDHSLSI EEKVPFMEAW WQQSHGLIIQ 120
  121 GGFKKQAIDD YVAHCNIQLR DNADIMMKKM TNHAVPFIIF SAGIGTIIEM YLRHKFGRVE 180
  181 SNTHVVSNMM GFDDDGYVNS FSDPLIHVFC KNSSVMPADR TFSEQIEGRK NVILLGDSVG 240
  241 DAFMDVGVEE EQVSLKIGFV NHDADKLVDK YLNYFDIVLV DDQSMDIPNQ ILEAIYNNKN 300
  301 Y

Type	Start	End	Confidence
Cytoplasmic	1	152	0.56
Transmembrane Helix	153	172	0.56
Non-Cytoplasmic	173	301	0.96