YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srf-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.86
Transmembrane Helix	44	60	0.50
Non-Cytoplasmic	61	70	0.41
Transmembrane Helix	71	94	0.78
Cytoplasmic	95	114	0.55
Transmembrane Helix	115	134	0.46
Non-Cytoplasmic	135	142	0.68
Transmembrane Helix	143	165	0.82
Cytoplasmic	166	172	0.88
Transmembrane Helix	173	192	0.93
Non-Cytoplasmic	193	202	0.85
Transmembrane Helix	203	223	0.96
Cytoplasmic	224	234	0.91
Transmembrane Helix	235	256	0.91
Non-Cytoplasmic	257	273	0.87
Transmembrane Helix	274	293	0.93
Cytoplasmic	294	301	0.77
Transmembrane Helix	302	320	0.92
Non-Cytoplasmic	321	327	0.61
Transmembrane Helix	328	346	0.90
Cytoplasmic	347	368	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGRNDDAFH PLLHSTPESS VKIPVPLVSV GRESSQSKGN MKTAILIWLT LQNSIHTLLI  60
   61 RYSRAREVDA MFVSTVAVWL TEVIKCFICL FLVAQEETPR RFIHALRTQI LEQPYDTLKV 120
  121 CIPAMIYIVQ NNLFYVAASH LDAATFMITS QLKIFTAAIF TVIILRRSLN RTQWFALAVL 180
  181 FVGVSLVQLQ GTKAKESSGE SPFVGFVAVV VACCLSGFAG IYFEKILKGS APVSLWMRNV 240
  241 QMAVFSIPAS FSAIYMQDSK TVNEYGLLYG FDSIVWLTVL WYGVGGLSVA VCIKYADNIA 300
  301 KNFATSVAII LSTIGSIFLF DFIPSFTFLL GASLVIFSIF LYSSHQSMVA ALGRLRGEIP 360
  361 STKEAFCL