YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	syn-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRDRLFEM HQISGINAAS PEKNNSKLAD VSLQQFLANV DEIRHVLTTL SADRHAIYME  60
   61 QVESLAAGCS DTAKCRKLND HVDKFIAQAR GIRRRLADAS EELVQYPESR VGSGRARHEQ 120
  121 IQMLIVSLEG IMSQFADDQA SYKAEAAKKI AAYLRKQNIE VTDSEIDGAI ENGSLFQLTR 180
  181 NINLGVAQKK ALFDDMKNRA TDIMILEKQI REVEELFVDM QLLVQSQGET VDRIETSVIR 240
  241 AEEYAEQAQQ NVRQAVVLRR KNRKWKIVTC IALIVLLLVV VYLLSHFLGA IIPGWK

Type	Start	End	Confidence
Cytoplasmic	1	266	0.99
Transmembrane Helix	267	290	0.90
Non-Cytoplasmic	291	296	0.89