YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40222
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPMSLVISN VNTVFRRKNP ILMVSMVRCL SSNQPTDDDM HISKRKLKKL FKVAQLSKKS  60
   61 RSYENDKIDK LSAMAEFGLK ESDLEDLPSH SKPVLSLTHH GKSNHQLYTL TEVYHKALKV 120
  121 HGSTEALEAH RRPLVAMRKE LTDAERMRMR MRVETTNQHK GADRVVAIAF TLNLCDMAMK 180
  181 FTAAYLTGSK SLFAEAIHSA MDTCNQLILL LGIRYSAKNP DLLFPYGYGN MRYVTSLISG 240
  241 CGIMAFGCGL SMYHGISGLL HPEPLEPLTY AYYALFMSLC FQGTSAITAY REVFAKAKKA 300
  301 NISIWNYVRT SADPSLNVVL LEDTAAVTGV GIALCAISLS SFLNSPIPDC CGSIVIGALL 360
  361 GTVASFIIRT NAAHLVGRSL PQRITDDIVA RLNNDPMIRS VHDVKATCLG VEQSRFKAEL 420
  421 DFDGRMITRA YLQEGVHLPA LLNEVKKIDT EDQLVVFMEN HGEKVIDRLG DEIDRIEGEI 480
  481 TKKHPDIRHV DLEAL

Type	Start	End	Confidence
Cytoplasmic	1	232	0.90
Transmembrane Helix	233	256	0.88
Non-Cytoplasmic	257	269	0.89
Transmembrane Helix	270	290	0.92
Cytoplasmic	291	318	0.88
Transmembrane Helix	319	343	0.77
Non-Cytoplasmic	344	349	0.71
Transmembrane Helix	350	373	0.82
Cytoplasmic	374	495	0.92