YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.87
Transmembrane Helix	74	91	0.76
Non-Cytoplasmic	92	102	0.69
Transmembrane Helix	103	125	0.88
Cytoplasmic	126	145	0.83
Transmembrane Helix	146	169	0.88
Non-Cytoplasmic	170	269	0.93
Transmembrane Helix	270	290	0.91
Cytoplasmic	291	300	0.79
Transmembrane Helix	301	321	0.89
Non-Cytoplasmic	322	351	0.89
Transmembrane Helix	352	375	0.88
Cytoplasmic	376	388	0.88
Transmembrane Helix	389	412	0.88
Non-Cytoplasmic	413	452	0.97
Transmembrane Helix	453	475	0.89
Cytoplasmic	476	493	0.84
Transmembrane Helix	494	515	0.90
Non-Cytoplasmic	516	527	0.82
Transmembrane Helix	528	549	0.93
Cytoplasmic	550	578	0.90
Transmembrane Helix	579	599	0.94
Non-Cytoplasmic	600	617	0.96
Transmembrane Helix	618	639	0.93
Cytoplasmic	640	705	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQSNALTTT TTGSSAPSVI PPTAPTASVK TKAPTKGPVQ PQKKPTTVDN GRRAYRNQVV  60
   61 VENVDRQAFR GIESFLSSLG QAVGLGNIWR FPTTAYKNGG LSFLIAYVVC GILFAVPAIH 120
  121 MEFALGQYAA KSPPAAFRRM MPILEGVGWM TCLVGAIIGV YYMIVISWIV LYLFNIIYAT 180
  181 KISKCNNDWN KNRSTICYEG VKQKLCSGYM LNSSLVMTNL TRNASVHSKM MYIDGKCQNA 240
  241 TNMKLAVGTE QFFTNFVVKP STGFTDFNSI NVPMLAAVAV CWVIAIISLI RGMKAIGKLS 300
  301 YYTVLLPYAI IIALMIRGLT LEGASTGLHF LFWGKPNEYG HYDFAGLYDP DVWIAALMQM 360
  361 CFSLSIGQGG LMNIGSYNKK TYNWYRDAYL VVLCDTLMSL LGGTAVFSTL GFLAEQRNIS 420
  421 ISNPKGFNEV VQEGHALAFI VYTEAIAQMP YPFLWYALFF VMLFLLGIST EIVIIETVCS 480
  481 CLADRFHYLR QHRWITVVTV STTFFLLGLV MTSDAGFYWF DLYDEYSAGV SATIGTAIMC 540
  541 LTVCWCYGLD NFRADIREMW EEPESRLDKY LGPGAYVWTI VWRFVTPICC LVIMFAWIWD 600
  601 KKYPFKGDSK KYPPVFDAFG WFVAALPFFV VPVFAGFAIK RFKDLNIPIR GVFMVQKQHP 660
  661 AYDRISEKWP EWKQKIGDKL PELEPGEDDL EDGLEGSDDD LFYEY