YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40296
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPADSNSTS VPLLRNQNLI PNRRQPTQWK HLAKPCLILI AILVLSAPVA YSLSELIMVA  60
   61 RHKSPAVSNL IELLIPSSKT SRTTTKTNDS TMTKLVQKSD ENFSPPAAFC GKRIVGYFAE 120
  121 FENTALTRKQ LRMLTHIVFL FAFPKNGTIT FGGESSSQKF EEMRRNVRKA SSTLKVMISI 180
  181 GGQYNSGEFS GLVSNETSRN LFVNSIATFV RDYDIDGVDI FWTWPKHSDE NNYLMFIREL 240
  241 RYAFTELQKK LNRKETFVIS LVISRNVNHL SKLVEFSNFV DFINIYSFNS YLYQVGPDSP 300
  301 LYGGGSRNVD EIMKYYICKT GQPSKFNIIV SFHATYWEGA ELPLRDDSDD IFKDQNSAKG 360
  361 GFAVRWRELL QQKWDMSNIK FHNLTKTSYM WIPGPPTRFM TLEDEKSLRE KNRYVADHNI 420
  421 GGITMWTIDQ DDGDHTLLKV VSSAELCTGD RRNEIKYKCD

Type	Start	End	Confidence
Cytoplasmic	1	31	0.57
Transmembrane Helix	32	53	0.55
Non-Cytoplasmic	54	460	0.98