YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sfxn-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDETLFGY PIYPKFKLGE PRFPQDTFLG RYLHCLDVID PRTLFASNKK LEESLELLNS  60
   61 FKAGTATNVP DKSLWEAQKL KSAILHPDTG EKVLPPFRMS GFVPFGWITV TGMLLPNPSW 120
  121 PTLLFWQWMN QSHNACVNYA NRNATQPQPL SKYIGAYGAA VTAACSISGG LTYFIKKASS 180
  181 LPPTTRIIIQ RFVPLPATSL ASSLNVICMR WNELETGIQV YEKDTGKVVG VSKVAAKQAV 240
  241 TDTTMVRAFL PVPLLLMPPC IMPYLERFKW VTKTQVRHIF VNAIVCTLSF AVSLPVALAL 300
  301 FPQESAISRE QLEPELQQKT KNSLLYYNKG L

Type	Start	End	Confidence
Cytoplasmic	1	100	0.98
Transmembrane Helix	101	120	0.90
Non-Cytoplasmic	121	153	0.92
Transmembrane Helix	154	175	0.95
Cytoplasmic	176	186	0.96
Transmembrane Helix	187	209	0.68
Non-Cytoplasmic	210	247	0.72
Transmembrane Helix	248	265	0.75
Cytoplasmic	266	278	0.81
Transmembrane Helix	279	301	0.93
Non-Cytoplasmic	302	331	0.93