YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39394
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIIQEFLAK ILSLLAEPIP LVEGQWLNIT FDVPILVDIN APLTPTLQFI YASESILICV  60
   61 GMFLMVYFNY FVKSFQIVHL NLQYLFLLFT TLYIFGSLAR FYMILVQLKF VTDLDTPYLL 120
  121 VAGILRMEHY GVSLSAILVV TIERAFATYY VVDYETKHRC WVAAFCALVS LTYTQCFVIP 180
  181 ICFFEASLLY IILFASLWAV FSNIVLMCLY YYNVQESKRL SWKAENLRKM KNVNYTLSKK 240
  241 FQVEENVKII KYLQVMSSML VFLIFFVIIF IVVPRVYLGS KTYSGQVMIS LFDINLALGA 300
  301 ILIPSVCVLH LRKTRDMPFS GKIHCLNKRR DDRQVNPITV FEDVTKSYFD QFQTSWR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.68
Transmembrane Helix	7	27	0.54
Non-Cytoplasmic	28	48	0.84
Transmembrane Helix	49	71	0.92
Cytoplasmic	72	81	0.83
Transmembrane Helix	82	104	0.88
Non-Cytoplasmic	105	128	0.84
Transmembrane Helix	129	148	0.84
Cytoplasmic	149	159	0.81
Transmembrane Helix	160	183	0.91
Non-Cytoplasmic	184	189	0.81
Transmembrane Helix	190	213	0.93
Cytoplasmic	214	254	0.95
Transmembrane Helix	255	278	0.83
Non-Cytoplasmic	279	288	0.88
Transmembrane Helix	289	311	0.89
Cytoplasmic	312	357	0.99