YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oct-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.77
Transmembrane Helix	41	60	0.80
Non-Cytoplasmic	61	153	0.80
Transmembrane Helix	154	175	0.75
Cytoplasmic	176	183	0.85
Transmembrane Helix	184	202	0.95
Non-Cytoplasmic	203	208	0.81
Transmembrane Helix	209	230	0.93
Cytoplasmic	231	239	0.81
Transmembrane Helix	240	263	0.90
Non-Cytoplasmic	264	268	0.78
Transmembrane Helix	269	288	0.90
Cytoplasmic	289	360	0.97
Transmembrane Helix	361	381	0.89
Non-Cytoplasmic	382	388	0.85
Transmembrane Helix	389	410	0.86
Cytoplasmic	411	416	0.86
Transmembrane Helix	417	436	0.95
Non-Cytoplasmic	437	443	0.74
Transmembrane Helix	444	466	0.88
Cytoplasmic	467	475	0.71
Transmembrane Helix	476	497	0.91
Non-Cytoplasmic	498	504	0.76
Transmembrane Helix	505	525	0.96
Cytoplasmic	526	585	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQAMETFA EISQEILMSA TKPPDFDFVL EQVGNYGTYQ IVFFFIICLP TSLPSAFSAF  60
   61 NIPFVVGNPP HTCHIPEGKE YLRPLTNDTQ ILSCKQYNET QINVFRAFTS APVDTYSDRI 120
  121 SLVPCQNGWD YDNSTYLDSL VTEFNLVCDQ QAWIEISTTS FYVGSFIGNC LFGYVADKFG 180
  181 RRRSFFVILT VLIVCGTASS FAKDIESFII LRFFTGLAFP ALFQIPFIIC MEFMGNSGRI 240
  241 FSGLMTSLFF GAAMALLGVV AMFIRRWRQL TFFCNAPFAF YIIYYFFLPE SPRWSVSVGK 300
  301 WADAKKQLKK IAKMNGKSNV DVDELVDSMK NHQNAAEEKE TKRSHNVTDL FKTPNLRRKT 360
  361 LIVTYIWVMN AIIYNGLTLN VSNLPVDDYW SFIINGAVEL PGYFVVWPLL QCAGRRWTLA 420
  421 ATMIVCGIGC VSAMFMPDGY PWLVASASFI GKFGVGSGFA VIYIFAGELY PTVVRAIGMG 480
  481 MSSMVAGSGL LLAPHIVNLG KIVKILPLLI MGLMALSAGI LTFFLPETLG APLPMTIEDA 540
  541 ENFGKKPEPD SGMFTQAAKK RESQPLLEPH TPMDRRRRSS RLMNI