YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: tat-5
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRKKNDES SSSSSQKPCV SSSSDDFSVS FVRAEEDDVA TTIRDKTASL KSNATHFSAA  60
   61 SAAKGGMLCC RSLFSRRRVL HSRTVRVGYG PVGHDANVTF TPNTVCNQKY NIFSFVPIVL 120
  121 FQQFKFFLNL YFLLMACSQF IPAIQIGAPI TYWGPLGFVL TITLIREAFD DFVRYLRDRD 180
  181 LNSEKYEKLT RDGTRIEIRS ADIEVGDVII MHKDRRVPAD VVLLRTTDKS GACFIRTDQL 240
  241 DGETDWKLRI PVPHTQHLPN EADIMELNCE VYAEKPQKDI HAFVGTLKIT DDDNVQDGSL 300
  301 NVENVLWANT VVASGTAVGI VVYTGRETRS VMNTTLPESK VGLLDLEVNN LTKLLFCFVL 360
  361 VLSSVMVAMK GLDNLWYRYL MRFILLFSYI IPISLRVNLD MAKLFYSWQI GRDKHIPETV 420
  421 IRSSTIPEEL GRISFLLSDK TGTLTKNEMH FKKIHLGTVA FSSDAFEEVG QHVRSAYAGR 480
  481 LAKHSFSAKL QNAVEAIALC HNVTPIFENG EISYQAASPD EVALVKWTET VGVRLASRDL 540
  541 HAMSLSVQLP NGQTLMKQFQ ILYVFPFTSE TKRMGIIVKD ETTDEVTLLM KGADTVMSGM 600
  601 VQYNDWLDEE CSNMAREGLR TLVVARKPLS QAELEAFDRA YHAAKMSISD RSQNMANVVN 660
  661 RMLERDLQLL CLTGVEDRLQ DQVTTSLELL RNAGIKIWML TGDKLETAIC IAKSSGLFSR 720
  721 SDNIHVFGNV HNRTDAHNEL NNLRRKTDVA LVMPGSALNV CLQYYEAEVA ELVCACTAVV 780
  781 CCRCSPEQKA QIVQLLRKYR APLRVAAIGD GGNDVSMIQA AHAGIGIDAN EGKQASLAAD 840
  841 FSITQFSHVC RLLLVHGRFC YKRSCALSQF VMHRGLIIST MQAIFSCVFY FASVSLYQGV 900
  901 LMVAYSTCYT MLPVFSLVVD RDVTATNALT YPELYKELGK GRSLSYKTFC IWVLISLYQG 960
  961 AVIMYGALLV FDADFIHVVS ISFSALIVTE LIMVAMTVHT WHWAMLLAQA LSLGLYMISL1020
 1021 ILFDQYFDRQ FVLSWVFISK TTAITAVSCL PLYIVKALRR KFSPPSYAKV N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle