YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE38132
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRRSSTRA DSTTKRPASP NSTPNAALGI FVAIARQILF IDARKVALFY LAFVTVLSFI  60
   61 ESRIELDSTY YLVQKHSVLN QYGVKMGWFW TLVIVGPFIW FSSKAHNRRD RDQPIVDVCR 120
  121 LGVGTACWYF SVQFFHKVLA LTSMCDKGRT LTRAQCSEKE GVWTPGYDIS GHCFLMIYSI 180
  181 LIITEEAIAY RHYQQVTDAV HQMDGDREEH DRLTRCIQYF FVAMLFLHAF WFKQIIISVL 240
  241 YYHIFIEEIL GAVAAVVCWF VTYRMLYPAG FLASPIRRTV GRK

Type	Start	End	Confidence
Cytoplasmic	1	45	0.69
Transmembrane Helix	46	64	0.62
Non-Cytoplasmic	65	85	0.84
Transmembrane Helix	86	103	0.93
Cytoplasmic	104	215	0.78
Transmembrane Helix	216	237	0.84
Non-Cytoplasmic	238	243	0.72
Transmembrane Helix	244	267	0.83
Cytoplasmic	268	283	0.92