YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-3
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDILESVVV TLHAICLLII STIRNCFPMG WLLRKDVRGQ TVLITGSGSG LGRLMAFEFG  60
   61 KLGARLVLWD INEQGNKETL KELEAMGVEA KAYTVDLSEY KEINRTADLV KSEVGKVDIL 120
  121 VNNAGIVTGK KLLQCPDELM VKTVSVNTNA LFFTTKNFLP GMLESNKGHI VTIASMAGKC 180
  181 GVAGLVDYCA SKHGAVGFND SLASELYALK KDVKTTVVCP IYINTGMFDG IATKWPTLLP 240
  241 ILSPEYVVDC IMEAVLTDRA FLAIPKFSYI FIALAGLLPT EVLNLYGDHF GITHSMDHFK 300
  301 GRQSRQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.57
Transmembrane Helix	9	28	0.71
Cytoplasmic	29	266	0.57
Transmembrane Helix	267	283	0.46
Non-Cytoplasmic	284	307	0.71