YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE42870
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.23
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAPPLEAGY WIFWLAAFCV ILVLIEIGAE YCSKKKFEQK MDQKREALVG PITSSPASIL  60
   61 ELSIFYEFLK AQWCAFTIGS SEPPISPRQL NLLSLLIGPS NSDQEIPRDT VAVSWVYVGF 120
  121 EFGESCEQFG ATDEQLRGHF EYQMICTNVQ CIYFVEDGKK RRMAGVTWYL RNDEKSKNHE 180
  181 DYNMIAIYET IREKRFEEVQ KIRKLEKEEA LRRGGWLGEP TDEYTSTIFS HLKLLTLKDG 240
  241 RLAVFACNAD GEEEKFAFNE RTERYEVLED VVEVEDRPSN YLLRII

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.61
Transmembrane Helix	10	31	0.85
Cytoplasmic	32	51	0.60
Transmembrane Helix	52	66	0.23
Non-Cytoplasmic	67	286	0.56