YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE38582
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSVSIRTAA ASFRLAPTRL RLIRPVIATC QTRNISSNDV FKITESASIP DLPPLPTPPI  60
   61 PGMSVDELIA SGASVLEELG LWTWWKPSSY FRWALESIHV HLDIPWWVTI VAATVTLRAL 120
  121 LIGVPVMSQK LVAKQSMYRK EMNEFRDRID EARKENNQLL QQQILLEQRD FLRSKDIRLG 180
  181 RQFMVMAANG AVFATQFFAI KKMVVVNYPG LSTGGTLWFT DLTATDPYYA LPFISAATMA 240
  241 LVTKVGIEMG TSADQMPPIM RAFMTYGLPV VIFGVSSQFA TGLCVYWTAS NAVSLIYAAA 300
  301 FKVDAIRKIF GIPPVVPLPP SAVQKNAISQ VLKSYKDNKA IPPSMADLRQ RDASSFKKAG 360
  361 RGKPIT

Type	Start	End	Confidence
Cytoplasmic	1	67	0.68
Transmembrane Helix	68	85	0.49
Non-Cytoplasmic	86	103	0.76
Transmembrane Helix	104	127	0.72
Cytoplasmic	128	178	0.96
Transmembrane Helix	179	200	0.87
Non-Cytoplasmic	201	227	0.87
Transmembrane Helix	228	247	0.91
Cytoplasmic	248	261	0.80
Transmembrane Helix	262	280	0.85
Non-Cytoplasmic	281	282	0.46
Transmembrane Helix	283	301	0.62
Cytoplasmic	302	366	0.59