YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE43292
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDITVLDVVP KCKKMVIYCI QERSAFGKML ETFRFHSTMI RNCTKRLTLK ATIIVVVLFY  60
   61 WVLLQNQEAP ISELLEERCD RSGWNYSTTA GRTRDFGSRF RVSFADIQKS QRWLHLPKIK 120
  121 NPTWNRDILM IVASRPGSVS RRKVLRKTWM NKANSKIIRN GRMQVLFLVG MVAGDRDLMK 180
  181 AVKKEAESFG DIIVMNLEDT YDNLPFKVLS LLLYGTNKAS DFKIIGKIDD DVIFFPDRLT 240
  241 PLLDENVIDS SSYSIYGYLS QDDELVVRNE TKPWYVPETA YNCTKYPVYA LGPFYLITNK 300
  301 AANLIVENSR FQNFMTVEDA LIAGIIAEGL GIQRHSLPMV FRYRFDNTDG KKILSWHMSK 360
  361 RSDRQFLDFY QQSLALYQLE QES

Type	Start	End	Confidence
Cytoplasmic	1	45	0.90
Transmembrane Helix	46	64	0.87
Non-Cytoplasmic	65	383	0.99