YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41279
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHIISDVVN TVSDFFPVKR FAALFPAVAT SPTIESVISP PSVDMSPIIR LAGLSGAVAI  60
   61 SLGAYGSHVL RDNPSIDERR RTAFDTASRY HLIHSLALLA SPAARFPLVT AGLFTAGITL 120
  121 FCGPCYHYSI SGVETTRKYT PIGGVTLIIA WLSFIL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.73
Transmembrane Helix	21	39	0.49
Non-Cytoplasmic	40	47	0.52
Transmembrane Helix	48	69	0.87
Cytoplasmic	70	89	0.58
Transmembrane Helix	90	104	0.45
Non-Cytoplasmic	105	105	0.36
Transmembrane Helix	106	130	0.76
Cytoplasmic	131	136	0.60
Transmembrane Helix	137	155	0.83
Non-Cytoplasmic	156	156	0.64