YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	116	0.92
Transmembrane Helix	117	134	0.81
Non-Cytoplasmic	135	145	0.71
Transmembrane Helix	146	168	0.89
Cytoplasmic	169	189	0.85
Transmembrane Helix	190	215	0.88
Non-Cytoplasmic	216	316	0.95
Transmembrane Helix	317	337	0.93
Cytoplasmic	338	347	0.79
Transmembrane Helix	348	371	0.90
Non-Cytoplasmic	372	394	0.94
Transmembrane Helix	395	415	0.91
Cytoplasmic	416	427	0.85
Transmembrane Helix	428	452	0.86
Non-Cytoplasmic	453	495	0.93
Transmembrane Helix	496	519	0.87
Cytoplasmic	520	533	0.89
Transmembrane Helix	534	557	0.88
Non-Cytoplasmic	558	567	0.86
Transmembrane Helix	568	589	0.91
Cytoplasmic	590	605	0.92
Transmembrane Helix	606	638	0.65
Non-Cytoplasmic	639	658	0.93
Transmembrane Helix	659	680	0.95
Cytoplasmic	681	746	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPVSTKKT IAPSTMKTTV APPTMRTTMA PTTMKTTVAP PTMKTTRSPS TMKTTKEPSM  60
   61 TQTTKTVQST ITNPVSFLDS EVTAKEYVKD GGAARKAYRD AIQVENTDRQ AFRGIESLLS 120
  121 SLGQAIGLGN IWRFPTVAYQ NGGTSFLIVY IICAFVFAVP AIHMEFALGQ YAAKSPPAVF 180
  181 RRIMPALEGV GWMTCIVGAV IGVYYMILIS WIVLYIINIF YVNNMGRCDN PWNQNNCYDG 240
  241 SEQSRCNKGL YSNMTANASS FLNTTMAPLM SSGSKRILYI NGKCQDATNM SVEVGTEQFF 300
  301 SKSVIRPSAG FTDFNSINLP ILGAVALCWV IAAVVLIRGM KAIGKLSYVT VILPYFIIVS 360
  361 LLICGVSLPG AKDGLYHLFG QTDFNYLYKR ETWTAALQQI CFSLSIGQGG LMNIASYNKK 420
  421 TYNWYRDVYI IVFLDTLMSI LGGITVFSTL GFLAYERGIN STDIDAFNHI VKEGHALAFI 480
  481 VYTEAIAEMP VPYLWYALFF IMLFLLGIST EVVIVEIVCS CLADRFRYLR ERRWLTVLSV 540
  541 SAVFFLLGLV MTTDAGFYWF DMFDEYSTGI SATFGTAIMC MTVFWCYGTN HFREDIAVMW 600
  601 GEPESWLATC LGPAAYFWTL IWKFVTPVCS LLMMGLWIWE KKYPHKGDGK IYPPVFDALG 660
  661 WFIAVVPFLV IPGFAIAAVI NTRRMNIPIR GAFMLQKQHP SYDRISEQWP EWKKAIGDKL 720
  721 PEQEPGDDDL NMIDGLETKE SDSLIE