YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39412
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	97	0.61
Transmembrane Helix	98	118	0.75
Cytoplasmic	119	138	0.76
Transmembrane Helix	139	161	0.87
Non-Cytoplasmic	162	179	0.75
Transmembrane Helix	180	203	0.89
Cytoplasmic	204	212	0.73
Transmembrane Helix	213	234	0.91
Non-Cytoplasmic	235	244	0.80
Transmembrane Helix	245	266	0.86
Cytoplasmic	267	274	0.81
Transmembrane Helix	275	295	0.93
Non-Cytoplasmic	296	300	0.77
Transmembrane Helix	301	321	0.85
Cytoplasmic	322	341	0.68
Transmembrane Helix	342	365	0.89
Non-Cytoplasmic	366	373	0.78
Transmembrane Helix	374	396	0.86
Cytoplasmic	397	421	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDKKLQTN QEVEKEQENG SPFSDFWVPI SAAIAVRAVC ASYSDLFEER VELTSVVYSF  60
   61 EKLKDSIAMV DDGLNPFEAK NMHFPPLTLH LFRFLLNTAP TMILPLFISI DVATTWILSS 120
  121 AADVVWRQTH GSSSIRKLIF SLYAFNPITI VSTGILSLTV IQNFVSAVIL LSLVTDRPTI 180
  181 CAILIGAWSS FTIYPFILIS CLVFRSNGSI VKFLSLVLVS ALTTITFVGI NYLLNNQSLN 240
  241 FLGPVYASIL NFSSIQPNSG LYWYFFVQIF EHFRSFYTMS FVVLYFFMPI PITFLIRKDT 300
  301 ILHFTIIGFL VSIFFPYPTL NQVSLLLAFL PVHDVYKKHF RYTILIAGTI VSTVFLMPVM 360
  361 WHMWIVSSSG NANFFFGTTI VYNVALINLV MDMIFVYSRR QIDLEYSDAL KKNTKMDFAF 420
  421 Y