YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE43606
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSCGIIDP DTPPPKAISY KNRRAGKGEA YEPTSHEHVA NTVSHAIGIG PTILVFYYFM  60
   61 CAYAHRDLQH ILMIIYGIFT TLLFTSSTVY HFCELLFRQQ NKHRKLRYYL HICDRAAIYL 120
  121 FIAASYTPWL TLRHCGLPGL NLKWMIWVFA ILGILYQYNF HERYKTLETI LYILIAAGPS 180
  181 VAIFTMNDRT GLEWMMTGGM MYAVGVFFFK LDGIVAFAHA IWHLFVLLGA SCHTYAVYAF 240
  241 LLGPDKNNPV PDI

Type	Start	End	Confidence
Cytoplasmic	1	41	0.95
Transmembrane Helix	42	62	0.89
Non-Cytoplasmic	63	71	0.73
Transmembrane Helix	72	93	0.93
Cytoplasmic	94	110	0.88
Transmembrane Helix	111	130	0.90
Non-Cytoplasmic	131	139	0.78
Transmembrane Helix	140	160	0.89
Cytoplasmic	161	168	0.83
Transmembrane Helix	169	186	0.94
Non-Cytoplasmic	187	193	0.72
Transmembrane Helix	194	211	0.85
Cytoplasmic	212	219	0.66
Transmembrane Helix	220	242	0.86
Non-Cytoplasmic	243	253	0.82