YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60463728
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEGIEKIKV LIIGGGLGGL VLANILKREN IKFKIFERDT SEKSRIQGYL IGLNKIGIES  60
   61 LKSSLCEEKF EKIKQLFKDG EFAVADRNLE ILLKFKSGGT VNRSELRSIL MEGIDVEFGK 120
  121 RLQSYIEDDV NGEVIATFED GTIEKGEILI GADGVRSCVR DFKLPNFKFA DVNVFRIQAL 180
  181 VPNVTNDILD VIFQGDENST ILKTLGNFRN TIIFGRTKNI QHAISLGIED VDNIERVIEE 240
  241 NQHHTEILLI SYEWRPKDVT NDPIPTTRQD LLNLIRRDTK NYHPMVLKLL NDYLGPQHLL 300
  301 DSHATPLTQA SPILNFKTSR VTLLGDSVHA MTSHAGMGGN TAIKDALELG NALTKIFING 360
  361 LPIIESLSSY ENEMLSRGFK AVGFSRSSTE RMHANEVGWF GEKFRNTFMK LFYQLIVLGI 420
  421 IKLD

Type	Start	End	Confidence
Cytoplasmic	1	7	0.52
Transmembrane Helix	8	26	0.54
Non-Cytoplasmic	27	424	0.98