YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60464532
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	333	0.79
Transmembrane Helix	334	355	0.88
Non-Cytoplasmic	356	378	0.76
Transmembrane Helix	379	399	0.89
Cytoplasmic	400	407	0.71
Transmembrane Helix	408	427	0.92
Non-Cytoplasmic	428	437	0.79
Transmembrane Helix	438	459	0.91
Cytoplasmic	460	469	0.86
Transmembrane Helix	470	489	0.94
Non-Cytoplasmic	490	505	0.77
Transmembrane Helix	506	524	0.92
Cytoplasmic	525	532	0.84
Transmembrane Helix	533	552	0.90
Non-Cytoplasmic	553	557	0.85
Transmembrane Helix	558	578	0.93
Cytoplasmic	579	618	0.97
Transmembrane Helix	619	639	0.52
Non-Cytoplasmic	640	647	0.51
Transmembrane Helix	648	667	0.44
Cytoplasmic	668	687	0.76
Transmembrane Helix	688	711	0.87
Non-Cytoplasmic	712	720	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTLFSLLD LLASRFRSDS QEGQDSQEGE NTSALSIQVS ESEPQSQPRS RSHTEVSRPP  60
   61 NLPTNNNNHN NNPNRVVRPN RSPIQTRQQR SHTTALDPNG LPPGVGVDPN LLSAQTRQQR 120
  121 SGSQLRPNNI NRDPSRRNST NLPRRPVSTT LQPINNTTTT TTTPTTTSAT TKTETLEVPT 180
  181 IPIDNNNNNE NEQPKSITLQ VPTIVELQTP IQEEINLEKE KIGPSPIPNF NTPSNLLNTS 240
  241 YAAGTVLITP PLFTPNDPMN SSKDGIEMKG YGGDGDDQDE YGDEDQYDEY DDADRDDDQQ 300
  301 NKEDIEQPIE ALEEKKEPVP PFSHKEFIRV FGTYFLKILG LTLVISIMAI GYGCFEIFLG 360
  361 CRYIDSSSTT WPYWAIVTHS ISRTILNFSL CMFPYFLLLT FFGFRDTIVP LIIGLISSSG 420
  421 ASAWAIYNTV HELLDQTLAL LPSYFFFCVA LVLSSHYMGR KINNPTFRHL FMGQFALAAI 480
  481 VLVLYDFAIL PWYVKTSSIN KSVVRILIHP GLCAMGLFVA RACSSRIKPK TPGTNVFPVL 540
  541 IFMWFSTYYG RFFNSNMSLL FMSGTMAIVS LTELLWRTTL RPRDKKIMNA ICGFCFKKRL 600
  601 THSQNFDKIY RDFLRHEQLY ENTSILTSCF VYIAFYNVFD KSQLDYTTLF SSMAIQFSFE 660
  661 WVTDIISMYI ETRIYKIEAL HWKNPPKYFY FMLLYTFFLG MSYSTSRVIL LGEGKWFNQS 720
  721