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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RPN2_DICDI
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIILIVLS ILISIVISGS VQSKITTTRG ISNVYSKNDI NNIKQFISSK YNGNTKLYGE  60
   61 SLKDTFYGVG VLTRIGETNI EATKDICKQT KEQLKQNKFT DIELVFNGVT ILSELKCLQG 120
  121 ESSSSLGNEQ QLQDLLKNKL ENGSLLEKTQ AINIYFTLSS AKAIDSKTVS IIDPLLIQAV 180
  181 NSMVSLMDED GTFKSVSTDD EGNLQNTAAA YFALARLSHR LKSNEVDKLV AKVVNKVDTV 240
  241 LASADETTDS LYFNDLSTTS SLLHGLLSLA SVNDKVADVI SNKQINQISE YLLRQKNVES 300
  301 LSDAYHLIVA LKRCQKNSIS QPISLALVKS IYSPSGLNDI RVRVTDIFDQ PIEASIVINK 360
  361 VVSSKNPRST PILSGKEMKF QSSDNSFVAD LSNENLKLGS YNFEFKVQPV DTDSYKSITN 420
  421 IQIITITGAV TVNDMKLSYA PKSDQLGSPK TTNEVQFGQK LPLIEIPSNN IARIFFRIAS 480
  481 EAQPYQAQQV GIRFYSPARE AVVPATYSAD AYSYTFTNKD ACKILGCQSG NYQLDLIIGD 540
  541 QSITPLQWNF GEINLKFNQS TIPTNRYPEQ LPISHNFRVA EKRPPQSISS LFTLLVLSPI 600
  601 AIFVIGLLFV GTNLGRFPTG MGFIYTIGFL GCISATGLLI VNYWLHSTMD VTLKNLALLM 660
  661 IPLVFFGHKS MSYYSNLSSS NIKKD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle