YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66805967, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKLNFWIKS IIIGLVSFIY IYLFVFSVNK TKDLEKLEIE NNKLNFENEK SNISILKYIE  60
   61 TINNLNNTIK NLNFSIEQSK QQLIQMENSF NKDLKLLQNS LNECEEIKNK LKNNKNNNNN 120
  121 NKNNNNNNNN NNNNNNNKIL LNNKNEIIPI LIPTYNRTNY LEKTIKSILK IRDKNKEKIK 180
  181 KFPIIISQDI CKKNDNQNEN ENCKEMNEYL EEINLNYQGI IVLKNLQNGN LVLNSTYESI 240
  241 SRHYKWALSQ IFDKLSFDKL LIVEDDLEVS LDFLDYFEKV SPLLDIDKSL FCISAWNDNG 300
  301 KKPLTNENQK QAITQFYRTD FFPGLGWLTT NRFWNEIKDN WPTQYWDDYL RQPSVIKGKQ 360
  361 CIRPEISRVK NIGISGATSQ QVYENYIKEI ISITDDQYPI NYSDVDIHQL IEPTYSNKLK 420
  421 ESITNAKLIY PYEIETFGYK NQTLKIIFKD QYDYQMLAKQ FGLIDDQREE IQRTSFKKIV 480
  481 SFYFKSNLIY FIPNQINW

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	26	0.91
Non-Cytoplasmic	27	498	0.97