YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60465362
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.97
Transmembrane Helix	54	74	0.91
Non-Cytoplasmic	75	91	0.85
Transmembrane Helix	92	114	0.88
Cytoplasmic	115	143	0.92
Transmembrane Helix	144	166	0.89
Non-Cytoplasmic	167	186	0.86
Transmembrane Helix	187	206	0.91
Cytoplasmic	207	211	0.74
Transmembrane Helix	212	234	0.84
Non-Cytoplasmic	235	258	0.83
Transmembrane Helix	259	278	0.93
Cytoplasmic	279	287	0.86
Transmembrane Helix	288	308	0.90
Non-Cytoplasmic	309	328	0.89
Transmembrane Helix	329	356	0.84
Cytoplasmic	357	380	0.88
Transmembrane Helix	381	401	0.94
Non-Cytoplasmic	402	407	0.85
Transmembrane Helix	408	429	0.96
Cytoplasmic	430	436	0.85
Transmembrane Helix	437	457	0.94
Non-Cytoplasmic	458	465	0.81
Transmembrane Helix	466	486	0.93
Cytoplasmic	487	716	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNQNYSNKS ESDSGRSQGT ENLVEIREEQ VVQSIQRITS LYPSMGEKNR SGIWNTFYLS  60
   61 ITAIGCIFGD IGTSPLYVYA SMFKGPPGEK EVIGSLSLIL WALIMVVTVK YVVFILNADN 120
  121 NGEGGIIALV SLIPKQTNQK LKSALTILAL CGSSFILGDG VITPAVSLLS AVEGLEVGVP 180
  181 GGEIKKWIVP ITVVILFFLF VVQSFGTEAI GIVCGPIMIL WFFSIGIFGL LKVIDHPIVF 240
  241 RAFNPWEGIQ HFLLNGSRGF LLLGTVILCV TGCEALYADL GHTGKMPIRL SWVLIVMPSL 300
  301 MLNYLGQASQ FLGNPNTSNP FFEMIPTSFF WPMIILATVA CVIASQGLIS GSFSIINQVI 360
  361 SLKFFPPLHV KHTSKKISGQ IYIAQVNWVL AFLTLITVIG FKHSSSLIGA YGLGVSMVMI 420
  421 ATTIMYIFVL RLHFRYSYWV IVPLGLCFII MDGLFFTSSI EKIPTGGWYP IVIGIVMSSI 480
  481 MLIWRYGRSK MIKVIHDSSP PLSTTLQQVD LLNRGDAAVF MSHYEEKTPL SLVKLQPFLT 540
  541 HMPYPLFFVN IYHLPVPFIK DEHRVVAKEL IPERGVFQIS INYGYAEIIN VPWVIKKLFI 600
  601 ERLIQLNPKS INKIKATTTQ DQEKLVIPTT KKEIVGYHYS EQNDTEGNDV ELEVEGVPHI 660
  661 TYFLSRLRVK SSKKQFILKR LSIFIYDILL QNSRSEAHYY GIHHSSMMEI GSKIQI