YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCFM_DICDI
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYILNNNVE GTSALLGSTV ATAFLQPFDF LKIRLQGSGF ASGGDLNKFK RVGVIDTCKN  60
   61 VLKNEGIKQF WRGSSPTIVA SGIAWGTYMH FYEAYKNILK SKYNVTQLNT FDHFICAVGA 120
  121 SATQVFITNP IFLIKTRMQL QTPGSANYYT GIFDGIKKTV KVEGFKGLYK GVIPSLWLTF 180
  181 HGGIQMSSYE HIKFYFSSNS GKSLDSLNAS EIFIASSISK FLASTILYPF QVVKTRLQDE 240
  241 RNIPNQNNVR VYNGTKDVIF KILKNEGIIG FYRGLVPNTL KVIPNTSITL LLYEEIKKSF 300
  301 NYIINE

Type	Start	End	Confidence
Cytoplasmic	1	69	0.47
Transmembrane Helix	70	89	0.47
Non-Cytoplasmic	90	306	0.58