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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60468239, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWIFSTRNN DIISKRCKLT FPTLKALLYL TGRSDQLFNI EILTNYFNNL DNNNLDGNNN  60
   61 NNNNSNNKNS NNNNDDLVFK HCGRLLYEVI QRGDLDFINK FMERYFSVFR EIHTFEKILP 120
  121 QIEQQQQQQQ QKLIVPKVDS KIQNQSNLTT STTTLASTSI TTTTTTSKSL ENSIQNKSEI 180
  181 KDIEMDDSYN PTLDKEVKLT SDITIEPPLS KLSTNCNNNN NDGNLDENEK IIGTIDEYFK 240
  241 KELISETYKT NPYGINEKND NDDNDNKDDD DDDDDDDDNH NNTLKPYKVI DFKRGRTKKD 300
  301 DRKEKKKLKL EKDIEKKRIE KEKHIEKQRK EFEKERKIQE KEKNKQEEIE KKEKLKQEMK 360
  361 KSKPSKKDLQ LIKYNQFGPK EMIKYRLIPP QEFPNSKIQF LLTFLSLLSK FGRLDIIKYL 420
  421 DQKYPFLLSK KSSLKNHSAK IEHRLLNPIF TKSDLVKILL LDSLKQLESL QNNKIDLNKS 480
  481 SNAVPNNVLK TSTNSIPENK GLKSSTTNLN KSAGLKLSQL FVNPLLYSVA SEDHMVLQVS 540
  541 PSEKPPSPRD IEAANNEEDD DSDNIPMNKV DSNLTTTPGG ENNNNDDEEI TDDGNVKVVQ 600
  601 RNKYLQKWDE IWSKFQGIIL LVLSAGLFSV MALAVKQLSK ELSSLEITFF RPKEKRLFLS 660
  661 LRGLSGTIGL CTYFYTITVL PLSEAVIISF TNPVMTAALA AVLLKEKWGP VQAICAFLSL 720
  721 CGITVISKPS FLFHDDHNDG SSASHAESDP HKLLYIFIGI IGAFFGAISY IAVRKVCPNV 780
  781 HAFVLVTYFS GLASLVTFPS AFIFQTFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle