YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60470603
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	32	0.83
Non-Cytoplasmic	33	70	0.84
Transmembrane Helix	71	93	0.84
Cytoplasmic	94	97	0.76
Transmembrane Helix	98	120	0.82
Non-Cytoplasmic	121	169	0.77
Transmembrane Helix	170	194	0.83
Cytoplasmic	195	263	0.86
Transmembrane Helix	264	285	0.90
Non-Cytoplasmic	286	305	0.82
Transmembrane Helix	306	327	0.89
Cytoplasmic	328	360	0.89
Transmembrane Helix	361	382	0.87
Non-Cytoplasmic	383	402	0.90
Transmembrane Helix	403	421	0.92
Cytoplasmic	422	431	0.76
Transmembrane Helix	432	450	0.93
Non-Cytoplasmic	451	485	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLQSIQND VLKICKVIGI IMIISLSILK IINSNQIEPY VDEIFHIPQT IKYCEFKFKE  60
   61 WDNKITTLPG LYILALIYSN ILSMFGIGDG IWISHCSVVV LRSFNVFCLI ITFFSIYEIL 120
  121 KISTYNLLLS PASSLSSLKI NQKEVIENKN SINNTIILRT IHLSIFPIFY FFHFLFYTDV 180
  181 VSTCSIFLTL LFSLKNKFNL SSFFGLISVT IRQTNIIWVF FITINNILKL YEENKEKQNY 240
  241 IFKELNLIKD IIEFIKFSIF NLLLIIKKFI GFIMVGILFL IFLYYNGSIV VGDKSNHESS 300
  301 FHVSQLFYFS LITMLFSLPS ILISSLLKRF GNQNEGNQNE NEKKILLYDP IEFLKNINFK 360
  361 YLIVIIIGMV LMIWKFTYTH LFLLSDNRHY TFYIWNRFIE KYSIGRYLPI PFYCYSIWFI 420
  421 WKVLSENRSK LWCIFYFLST AMVLLPSPLV EPRYYIVPFF LFQLNQFHYY NNFIIQNGTI 480
  481 GRFFY