YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60471764
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALNNPMSA PFFSFVVKVI GIWIIFFGIL KLIYIKYKDQ IDIDGFLERT NLSVQLFYIG  60
   61 FSTTRLNSMI KSISNGRYER FWYYWFKIGS WVSLSLLPLS IGLLIYNLFI IFIKPTGIEP 120
  121 VISPIVPGVN VKGSDSWYLI ISVLISMIIH ELGHAIASYV SKCEINSIGF FFLFIMPGAS 180
  181 VNLDYIELDK ISLWQKLRIQ CGGVWHNVVL CIIGYLLLSS SSFLLSPLYK ISNDKLYITG 240
  241 IPNGSLLERN LNIGDQILSI NDCKISNRSD LVECIYKELD KTRSYCISQN TITCLENVFN 300
  301 NNNNNNTNVN LSNANNKKIN LINQIDNDKR LRECFGINDA TTLVECVPVS IDSPSECAKS 360
  361 KKECINFNQF NYHIFHLNLL SQDFDNVEQL SFLGTAQQLW DSFIVNNYQS RFVFLNGWDL 420
  421 PWYFNQFFSY LIPVSAGLAA FNAIAIPNMD GEHILETILS IIFLKFGGSA CGNDKKNSPN 480
  481 NKINKTKINN TNNNNNNNNN NNNNSNNNNN NNNKESSSSS VLSKKEKRER LKLIISKVIK 540
  541 VSTILLFGLT VILSFYNLKY QR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.54
Transmembrane Helix	12	35	0.85
Cytoplasmic	36	87	0.55
Transmembrane Helix	88	113	0.82
Non-Cytoplasmic	114	135	0.63
Transmembrane Helix	136	157	0.87
Cytoplasmic	158	164	0.54
Transmembrane Helix	165	186	0.85
Non-Cytoplasmic	187	202	0.59
Transmembrane Helix	203	225	0.84
Cytoplasmic	226	426	0.62
Transmembrane Helix	427	446	0.69
Non-Cytoplasmic	447	452	0.46
Transmembrane Helix	453	468	0.39
Cytoplasmic	469	537	0.84
Transmembrane Helix	538	556	0.92
Non-Cytoplasmic	557	562	0.76