YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG8_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.81
Transmembrane Helix	39	57	0.57
Non-Cytoplasmic	58	131	0.64
Transmembrane Helix	132	153	0.76
Cytoplasmic	154	204	0.64
Transmembrane Helix	205	225	0.82
Non-Cytoplasmic	226	233	0.52
Transmembrane Helix	234	258	0.81
Cytoplasmic	259	313	0.57
Transmembrane Helix	314	335	0.91
Non-Cytoplasmic	336	414	0.59
Transmembrane Helix	415	436	0.85
Cytoplasmic	437	442	0.68
Transmembrane Helix	443	463	0.83
Non-Cytoplasmic	464	469	0.56
Transmembrane Helix	470	504	0.52
Cytoplasmic	505	510	0.65
Transmembrane Helix	511	530	0.78
Non-Cytoplasmic	531	566	0.70
Transmembrane Helix	567	587	0.94
Cytoplasmic	588	594	0.61
Transmembrane Helix	595	617	0.89
Non-Cytoplasmic	618	625	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKNNNSNN NNNNPIIIKD GTNCFFKEIK DVLKFSRNWN LIILVSTIKL LLIPSYLSTD  60
   61 FEVHRNWLAI TSSLPISKWY FENTSEWTLD YPPFFGWFEY FLSKFAYYID SEMLVIDNLG 120
  121 YKSTSTILFQ RFSVIISDSL FILSTLLLSN YIYNIIIKKN NNKNNNNNNN NNNNNNNNNN 180
  181 NNNNNNNNNN NNNNNNLHWY HDKSFIISSI IILNPGLLMV DHIHFQYNGF LKGILILSIY 240
  241 FLVRGNILIG SILFSVLLNF KHIYMYMAPA FFVYLLKYYC LKSNLNDNTT SKVNHSKQQQ 300
  301 QQEFTIFGIK IFNLIKLGIS VLSIFLISLG PFFYMGQIQQ LISRLFPFGR GLSHAYWAPN 360
  361 FWSIYNFLDR VLLFNGLYKK IPFFKNFIIP DQVTGNLTSG LVGSETQSHI LLPKITPQIT 420
  421 LLITILFLIP SIYSILKSKS WKHFILGICQ SSFTFFMFGW HVHEKAIIMI TIPMGFLCLV 480
  481 NNKFSKLYFL LSTIGHYSLF PLLFQVEEIP TRILILVTYT LLVYLSFISS SSNNNNNNNN 540
  541 NNNNSNNNNS KQRKCSFSLG LYWFEKFYLF GIILLEIFNV FIHPVFLAHI ERFSFISLMI 600
  601 TSVYTSVGII YCYLFTFKLI FKNEY