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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60473189
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLKRTVFS QRLEAVKALE NKTREEKATL LAAVETQRNA RLVKDLIIHL VFFVVFVLIV  60
   61 VLQLNPQSLF IINTSLKNQI LFSQDSQYLE INNPSDFITY LNSTFCESIS DMSLENNDAM 120
  121 NKIIGNVIRI RTARVKPDSC SNNGFNLTCY SNNYDKDTKD RSPFGPNDMY TYTSNSHGSY 180
  181 VFGHNQYVWD RSGYYIDIPV SDIKTGVESL IDNGFFDIQT RSVIISFSTL NLNFQSRTSV 240
  241 FTMLTEWTAS GSVNPYYSIR TYRIQLYMDA LDKFRGFLEV SFFIFILYYF YYFVNEARID 300
  301 FKLGRFKFYI SNFKNIFDVI NLTLFIASIA LYLAFLGDNS RDLNINSQIQ TTTDYPLYLE 360
  361 NLGQTALVLY QISAINILLM SFKTFRFLVV HRRLYILWIA ISQSRLQLIT FTIMFCIMML 420
  421 GFLFSGWLTF GTDIASFNGF VTSLGTLLQF IIGNPPDYEA MSYTNRALGP IYYLLFTIFM 480
  481 FFILVNMFVA IISDSYQNIS NTFEKKQKTK RYLLTRWERT MKSLLLLFTP NSLDIYDLVL 540
  541 MFIDQKPGLI ETDGIDPSRF KDEIMIIQPI QRARIKYLDQ IQSAKNTGVT FELKLMGQQV 600
  601 HKKDLDTWKK EAKIKEKKKF ESIQQNINIL NTKLDLLLQA MNVPQQSIPQ LINGSTGMPQ 660
  661 SPIINNNNNN GGSIPSSSSN GSINGSNHIN LSGGTNTP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle