YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60473417
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSTRLWVF VLVGITILAS IVYLLPSYSQ PTNNYSKTDI IHTPTPTQTQ IQTQTPTETP  60
   61 TETPTETPTE TPTETQTPKP TTTPALTTTP EQTKKIIVGD LGHERDFPLD MKNFPWEEFK 120
  121 AAARTGKTEN TDKYSQMLIL TLAKYLIEPP LVPINESCKP EPLPTPSDDV CGKYPEVFSG 180
  181 KRDKPVKIGH LVQIGFDVDV LEIHLNELYD IVDHFFIIES TVTHYHRMLK PLIWEHVKFQ 240
  241 DRFIKFQDKV VHLILDDTDE ENGKDMFDAE RYQETRRWEK FLDWNKRTNL YGDEDIIGFG 300
  301 DTDEISARIN LHLLKNCQIK DIYAVDIGVW FPYGPIDQVF RPGYPVPGNP YTLGDPTYYT 360
  361 LKKAKAKPKS DPPSRNRGTS GHYMLGGMHM SHYGYLPFQM VKYLSCTECG ITREDQITNF 420
  421 SDDILNGKIQ ELELRLGKTK SDHVHKISKL SSMDDFFKKE VAILPWFYNC NRNRYPVWER 480
  481 KNDPRLF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.61
Transmembrane Helix	7	26	0.61
Non-Cytoplasmic	27	487	0.99