YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60473396
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELIAPFLT LSMICLMWLN FCQFLKKHKV ISSTGIIYVL VWRIFPQFNW YSRIVVGLVP  60
   61 LIISFQYALI GLGIINDQKT VESMSRSGSP RELLLGPLSY GIIISLLTMI FWFSPISIIT 120
  121 IGVLCLGDGF AAIFGLKYGT KRIPYNREKT LIGSLAFFIC SFIGTFILLT LLQDRLLYPS 180
  181 IVLAPSLFWV CLISTLIESL PLRDWDNITI SICSVLTLNL MGY

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.72
Transmembrane Helix	5	22	0.84
Cytoplasmic	23	29	0.70
Transmembrane Helix	30	46	0.84
Non-Cytoplasmic	47	53	0.76
Transmembrane Helix	54	75	0.92
Cytoplasmic	76	92	0.92
Transmembrane Helix	93	112	0.94
Non-Cytoplasmic	113	117	0.75
Transmembrane Helix	118	139	0.93
Cytoplasmic	140	149	0.93
Transmembrane Helix	150	171	0.93
Non-Cytoplasmic	172	176	0.81
Transmembrane Helix	177	197	0.88
Cytoplasmic	198	223	0.75