YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60473878
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDNKTKLII YFFIAIISGY IYYSNQQLNK QNIVKQVIYE KLHTKNLIIN GEDKPIILAH  60
   61 RGSRYLLPEN TILAFKTALD IGADVIETDV RKTIDGELVI FHDKSVERTT NGKGDVEELT 120
  121 LKELKSLDAA YRFSADNGTT YPYRGKGIQV PTLVEMFESL PSDTQINIEI KEDDMEVAEK 180
  181 LWKEIEHQME TTTRKPKSIL IGSRYCPPTQ HIRSLAKLYQ TRNNIAQLPI STSACEKDVT 240
  241 KFVVLNQLFL APIYFSMYPI TGYECFQVPV ASGPIHLDTL KFIDAAHHFG KHVHFWVVNF 300
  301 KDEIDHLLTL PIDGIISDRP DRVVEQFKSH NIKSKQFQIP KPLPSNTTGT YYLPLYDIDE 360
  361 NHTCVTITCI LLQRSHQIVI SLIFSFLLLK LINFKNNNNN NRQVKNQNLQ KKVK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.87
Transmembrane Helix	8	24	0.89
Non-Cytoplasmic	25	414	0.97