YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60474848
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	145	0.86
Transmembrane Helix	146	164	0.47
Cytoplasmic	165	350	0.56
Transmembrane Helix	351	385	0.75
Non-Cytoplasmic	386	959	0.57
Transmembrane Helix	960	978	0.55
Cytoplasmic	979	992	0.85
Transmembrane Helix	993	1016	0.87
Non-Cytoplasmic	1017	1023	0.66
Transmembrane Helix	1024	1042	0.60
Cytoplasmic	1043	1071	0.64
Transmembrane Helix	1072	1094	0.78
Non-Cytoplasmic	1095	1100	0.56
Transmembrane Helix	1101	1119	0.77
Cytoplasmic	1120	1126	0.71
Transmembrane Helix	1127	1150	0.86
Non-Cytoplasmic	1151	1160	0.72
Transmembrane Helix	1161	1181	0.92
Cytoplasmic	1182	1195	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNDLNKSN MSSSQNGNTF SYSANHSPPS SSNNLAASLG NITSSNHDYN EESTDIEIQE  60
   61 KTPDQYSPLL ISDPSSSKSR KSISASSSID EVDNRNTIQK IKDFITRKHI YLSRTIILEL 120
  121 EEQPKKYFYN NNIALSQFIP PLQTGYLFTY ISPLVFVLSV TIFKEAYDDF KRYRRDKEAN 180
  181 SQHYSKLTKN GFISIPSSDI KVGDFIKVET NQRVPCDMIF LRTTEKNGSS FIRTDQLDGE 240
  241 TDWKLRRSVN ITQKLSLDED LVNLRASIYA EKPKKDIYNF IGNFTNEESG ETESLSVENT 300
  301 LWSNTVIASG NVIGCAVYTG RETRCVMNTS TPSTKVGLLD NELNTLSKIL FVLLLCLSLL 360
  361 MITLKGFRGL WYIYLFRYLL LFSAIIPISM RVNLDLGKTV YSWMMMKDPL IPGTVVRSST 420
  421 IPEELGRVEY LLTDKTGTLT QNDMVFKKLH LGSVSFSSEG IKDLQEELKQ SYDVNNINNN 480
  481 NNVNVKISGN SRPKRNFSRK IKEAITAIAL CHNVTPVSED ANELQLNTEK KKKKKRAFFG 540
  541 RKQYEKLDDE ENSSINNGSS GVKNRNDEFS KAIDKYHSAQ KLPNNNNNIN NNNNNNNNNS 600
  601 TNNSNKSNYE SGSSSTGGSY DSGKYDSGTF DSGIISSSEP KPQSYQASSP DEVALVKFTE 660
  661 SVNLVLTGRE LNSITLLNPL GELEKYEILN IFPFTSETKR MGIIVRDKDG EITFYMKGAD 720
  721 AIMAKLVKAN DWLDEECGNM AREGLRTLAF GKRSMSEEEY HRFVATFNAA KTTIVDRAAK 780
  781 VQEAIATIEK DLELIALTGV EDKLQEKVKP TLEMLRNADV KVWMLTGDKI ETATCIAIST 840
  841 KLVSRTQSLF QISVTDKTRA REKLSQFAAM RDSCLVIDGP SLQMCLDNFK DDFMSIATKA 900
  901 PSVVCCRCTP TQKADIVRLI REKTKKRTCA IGDGGNDVSM IQAADVGVGI VGKEGKQASL 960
  961 AADFSITQFS FLANLILWHG RNSYKRSARM SQFVIHRGLI ISFIQCVFSA IYYFAAISIY1020
 1021 NGMLLVGYAT LYTNAPVFSL VLDEDVPMEI VFRYPELYHE LQKGRSLSYK TFFIWVLKSV1080
 1081 YQGGAIMLLS ILLFESSLNN IVSITFTSLI LCELLNVATE INTWHRYMIG SLIVTLLSYV1140
 1141 ITMMIPQLLA FELSFILSWE FVWKVMVITL VSCFPLYIIQ FIQKKLDPPS YSKLT