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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60474838
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNKYIIFLY LFVLISHIYC VPPKCITTKN IYKDSQVFGD GVTIEKNVEW WFLEQLSHSK  60
   61 GAIYTDNTLK GGSSEINEIA NYNIRDPKEP NPITSTYKQS LPNKSDNKII YNSLTYNDQP 120
  121 SGSYDSVCFY YLTFFFFFFF FCLSLFAHAK GFFIWNEEGG IHVIHSVPQS PEKGYEPLFN 180
  181 FNKKTLKNQH AQHSICITLS KEELYIIPKY IIYSNLNIQT INTVSTGNGQ KVKKVSSADS 240
  241 YSRNLKTKVE KISSGVIKLE EIDSTILATK IPKTFKELDG LMSEYIFVEK KNDGDPDIWD 300
  301 GIIYLNKWSQ LAVLILNKDI TSSDTAHETN VHYNKIYESK NKGDYFIQTT NKNLYKAYNK 360
  361 KIDKAHKEKI KFFILWHYID NFKNGNNFKT MVHTQTKIEN GLNAISPAVE SVYLSYRFET 420
  421 PWSEVISSDS GSDHSKMSYQ FNNMDKAYSG GGGGTICFGD LNWHGRQEAR GGGSFCSDEM 480
  481 KYLSEYFYRR VGIIRHPDKG QYLIKASLRL NSIAGQKLNL NGLIDKYPQR LKEILGIRKL 540
  541 DFETKVKGYE DDEKYYHLNP FIIVYNNEKD KLFSNEYNYG YDNVYIPLLT QLKDQTTNKY 600
  601 KSELFDFNVF PSINGEIILC DDNDVTCSFE KSKSYQLFKD IYVESTFTLT SSKKNKKVTA 660
  661 LTQNTIIEPT SILTPFPDKI YIDLKNIDLV KELYEKLKFI KNKNIIQLKE VKIKDDLEPF 720
  721 KFPNKIEGDQ SDSEEGHDDK DYNEINKNIC KAFPSDTDSK IIKYHPDCQD HLIYCILLTE 780
  781 NRHGDLQNIK SNDELIKVLG EYTKGINGAL II

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle