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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60475176
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLLSLITK KVSPNQIGTI LKTKSSSSSS LLNNIRYSTL NNSNKLIHPI STSTRFNCNF  60
   61 NESNKNVLNK NNFEPSNKVI SIKRNVTNRL FYSTLKDQTG SVLPTTPNQG ITSIDMALEL 120
  121 TKDAKGIPFE QLTIGIPTEV YQNEKRVSMT PENVGVLVKK GYKVLVEEGA GKGAKFSDAK 180
  181 YIEAGAKITT AANLFKKTDI LLKVRGPQFN TNLGKHEVEM MKEGATVISF LSPAQNAETL 240
  241 KLLSQKKANA IAVDCIPRIS RAQVFDGLSS MANIAGYKAV MEASNYFGRF FGGAITAAGR 300
  301 VQPAKVLVIG AGVAGLSAIG TAKNIGAIVR AFDTRSVTKE QVESLGGEFL EVKIKESGEG 360
  361 SGGYAKHMSK EYIEAEMALF ERQCKEVDIV ITTALIPGVP APKLITKQMV DQMKPGSVIV 420
  421 DLAAETGGNC ELTKPGEAYN YNGVSIIGFT DLPSKMATQS STLYSNNITK FLLSLGNDKD 480
  481 GFKLDFTDEV HRGSTVTYNG TLIWPAPKKP VPVTPPSPST PVSNKEKVES NLVKEETSLF 540
  541 NKTLKSALGA TAAMCGAVAM SMGLPADFMV NLTTFSLAAL IGYKVVWGVT PALHSPLMSI 600
  601 TNAISGIVAV AGLHLMGGGY IPSTGGQLLA SAAVFMASIN IAGGFTITKR MLDMFKLPTD 660
  661 KPTYEYLYGI PSLGFLAAYL STVGSGGPAL TQLAYLASSI MCILSISGLS SAKSSRLGNI 720
  721 LGMGGIAIGL GATVASLGVS SALLAQMAGV GLVGGGIGYL FSKRVNFTEL PQLTAAFHSF 780
  781 VGMAAVLASG ASLLADYSNF AALDTIHKSS VYLGALIGGI TFTGSVVAYA KLQGHIGKWK 840
  841 VPSKPYHVPN RHLVNTGLAL ANVATFATFL STTNPTLGLA CLGATTILSF IQGHLLTAAI 900
  901 NGPDMPVVVT VLNSYSGWAL VAEGFMLDSS LLNIVGAIVG SSGAILSYIM CKAMNRNLMS 960
  961 VILGGVGTSS MGKGEAMKIT GTHTEINVDQ ASEMITNSKN ILIVPGYGMV VSKSQYPVAE1020
 1021 MVKTLIEKGH NVKFGIHPVA GRLPGHLNIC LSEAKVPYDI VFEMEEINPE MKDIDLAIVI1080
 1081 GANDTVNSAS VEDPNSIIAG MPVIEVWKAK HCIVMKRSLT NAGYADIQNP VFYKPNTSML1140
 1141 LGDATNTCKE LANKIDKHYN SSH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle