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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60464779
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKNNLNRNR GILTSTDEDS NDINNNNNDN INSPNSIKSH KSSKSGSSTK TNKSTKTIKS  60
   61 ASSSLQSRQI DLGFLKKLDT LPNEHSDDSY EEEDEDEDDY ETHSYDSFDQ SCDDCDENNI 120
  121 EDSEDSCELA DDEDSENLSE NDNNNNNNNN NNDNDNNEFN FGEGEEENNE ENNEEEYNED 180
  181 NEDNEDNYET VNKIKKHDVF RKNQLKNILE FDDTFVGNKY NKHKTFNKFA YNNGAKTSLE 240
  241 SIIEKSESSI TQRSNGSSPI PKRKKSITSN VDNNNNNNNI NNNGNNNNNI NDNGNNNKSP 300
  301 FLHQIKIPHS YKEKLISPHY NYNRTRGSLN LPPNGGTYSS PSSSSSSYSS ISTTSSIFPT 360
  361 SPNMEIPRPR SLPQTFSSSS SPSPIDDHQK QDELGKSPLL KQKQKDEEKK EKEEKEGRGR 420
  421 GGGGDNISIV DFRDNIEKVK RKDNNNVFIS KRRVSFDHTS TNLKDQEILE KSQKKNILKN 480
  481 KGGQEFYEPV KELSKEDKER RMYISVALIK DAIHYRNPNH LLMMDRLKVY QIYFHPACRL 540
  541 FLFLVIIIDL MLIYFEYPTN YPIRGYGTQF IELACVLVFC FELGLKRYVY GKPMEKNVWN 600
  601 WVKAIVLILN LIDLLVAFIL VANGIVTDIR ISRLLRVYYI IDYDRLTRDL FHQVTYTLFQ 660
  661 MIPVGGVFFT YIFLSSILFT IIFSNGTTAS PGYYDSTLTS FKNTMVLVTT CNFPDIMLPA 720
  721 FYTSQWYSII FIVYLIFGLY LGVNFMIAIV YQSFRKAVLG ETKNNFRTRR TALLAAFIIM 780
  781 DHDKNGVISL DQWREMYKEI VPKSTSYEAN VAFELVDTDS NGYLNAREFF AMCDVFVTGR 840
  841 KEVRKLAKRR LEREKRKREY LIRKNEKLLH RKKKQKKIKK EQEQLQENEK EQVQQQQVEE 900
  901 TNNQNDLKEF FQKRKTIIRK PNEPKTTNDH LPILPPATIN STLQDSQATC ISIGNSPQIS 960
  961 DLNYKLPQQK NVEISIPEST KSNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN1020
 1021 NNNNNSFNNK YDDNDNNIND NNNYKNEEKN FLEDVDNDGD NVSNEINQDK NSIDELPQSQ1080
 1081 KHQDKSLEKK QHIHILHHNH SHIHHHHHRH KKEIEFKEVS RFQYIYGYII NYNLKIITKH1140
 1141 WIFELFVSLM LFFNAIIITM VMVHYRNLYV PKWTIICDDI LLGISIVEVF LKVISNRKKF1200
 1201 IFWIGFNVTI VSISLIGKIV LEYALKSITK NSLNLLRVCC AFRYIRLLRL LSSTRKMRHF1260
 1261 MQSLAQLSLI FLNFIGIVLV IYYIFAVIGI WAYSGRFYRG NPALVGTDYD TFNYYGYANF1320
 1321 DTFISSMFTL FHLMVLNNWL VTFYAAIDVS SAWAILYFCS FYFILGICVL NLVVAFLIEA1380
 1381 VNYTNNFFYS KRRKFSNQSL EQFKKQFKVK NSKKGIQENS NQDKIKNNNN NNNDNKNKNN1440
 1441 NSNNKNDNKN NNSNNDNNNN DKNRSDSSSD DNDGKGRGGG GGGGGGGGSG ENSFGFNHLG1500
 1501 SINGSIFTND ELKCCDIDDR GDYRLPIQSL RNDGSLKFLD MTHNHFSPPT KKAHKKISPE1560
 1561 TIKKNFVGFE ETKKDSNVNP TRGDYSSIED VEEFIPQDYL LEQIKDLKTD SGLGYVSDDE1620
 1621 LNGTQHQTFP KYSSDIGSVF RKEYSQRRRQ SIRHNSLGHI LKPSESQTIN QNKVFSNPLS1680
 1681 RTHPIQEGIE SEPIDFSNFN GNNNNNNNNN NNNNNNNYNN NNNNNNIVKN PLPKTMPSSK1740
 1741 LLPQSTLQPS DKIISRPPTP QSNVKQQQSI LNKSSSNNPI LNKSGNNLSS SPSSPILSDV1800
 1801 RKSVKLVNES SKASFSKKDL LKSKKLRLEK KIKDIEKELE KESKEYKLKM KERRKNSNTD1860
 1861 CDDDDGDVDN DDDGSDIDGD NNVFDDDDSV DFEPTLRKSK IKKEIKRKSN VSAGLGFEES1920
 1921 NHGFDDNDYD NDNTSGTSGR KSNNKKNNHK NTPIETDTSR EDFTDLNDES DFTEGEIRRF1980
 1981 RKKKDPQQHF DAHDLETKMF GKELKDVNLE EINFDQFLEN NVIGAVTGDK ILKNPIIETD2040
 2041 TDSDTDNNTK TNTDTGNEKK 

YRC Informatics Platform - Version 3.0
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