YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABCC9_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	138	0.47
Transmembrane Helix	139	160	0.72
Cytoplasmic	161	171	0.66
Transmembrane Helix	172	197	0.72
Non-Cytoplasmic	198	263	0.72
Transmembrane Helix	264	290	0.83
Cytoplasmic	291	355	0.79
Transmembrane Helix	356	380	0.83
Non-Cytoplasmic	381	399	0.66
Transmembrane Helix	400	418	0.72
Cytoplasmic	419	773	0.70
Transmembrane Helix	774	797	0.85
Non-Cytoplasmic	798	817	0.64
Transmembrane Helix	818	842	0.88
Cytoplasmic	843	899	0.67
Transmembrane Helix	900	919	0.81
Non-Cytoplasmic	920	920	0.28
Transmembrane Helix	921	935	0.68
Cytoplasmic	936	1007	0.72
Transmembrane Helix	1008	1028	0.86
Non-Cytoplasmic	1029	1345	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRNKIKNKK SKSDYYSEIS LEEEEDKEEE IKDKKVLSKE EIKENENKNE KIKQTQCPED  60
   61 NASLFSKITF GWITKLIVKA YIKKSLDIKD IFDVPNYLKS NYTSKFLTTE KQTFKRNTKY 120
  121 SLILNIYINF ILLKNKKLIL IQFLRVLFTL LSPLILKLFI EFTQRIDSEK SIIEGIIYCG 180
  181 LLFFSSFCSS LVDEYLVWFG MITSSQVKSC LTCLIFEKSL KLSNSAKVKY NAAKITNLIS 240
  241 IDVDNFSNFF WSNSVEIFFQ PFQLIFLLIL LISEVGWSGF VGTAVILISF PINSYFGKKT 300
  301 SDYYEKLLKY TDKRVSTTSE FINGIRFIKM YAWESLFLKK IEKQRKQELK ILLERGLFWL 360
  361 GQIIIINTNS TFVFVATMVT YSLSGNKMKL ETAFTAMNIL DSIRILLIVM PYCYYSIMEL 420
  421 IPSNKRIEKF LSTLEIQQNL QTTKNSNTIS INNGTFKWKD ENFEETDDDD DHDDDDDEGE 480
  481 KEIEGKEEKE EINNFIFENI NFKAPIGKLT MICSPVGSGK TSLINALIGE IEKVNGEING 540
  541 VPENISFTSQ QPFLLSTSLR ENILFGKELD IEYYKQVLDA CCLVSDLTQL SALDLTEIGE 600
  601 GGINLSGGQK QRVSLARALY SNSDFILMDE PLSAVDPEVA NHLFEKCIQG MMKNKTRILV 660
  661 THQIQFIPYA DHIVIIKDGK IIQGTYKELK DENGIDFESI IKTKNSNLNL NKTIKDEEEK 720
  721 EDKEGEEKEE DKKEMILKLI KINYSDELKE KAKLLVEEDR NEGEVSFKTY KEYFYYGSSN 780
  781 LFLFITLLVF LIGLIVNRLS DFWLTIWTEQ SFKEKSQTFY IICFVSIFIV SLILIFIRYS 840
  841 LVAKIGFKSS KKLHDLLINS ISKSPIQFFD SNPSGRILNR FSNDISDIDT SMIDMFSDTL 900
  901 EYIFAIVVGI FSIIYINPMT IVPFLILSMF YYQIFNIYRV SVRELNRCKS ISQSPIISFL 960
  961 SECCNGLSTI RAFKQQSRFI GIMNDNIDKN LKCEFASFAV EMWISIRLEL LSSIIVFIVS1020
 1021 LFSLFNGYSN SALSILSVST ARSITSYLKS ACRQMVDLER KMNSFERVNN YIKLPSEGSG1080
 1081 SGVKSMEFIS EKDLLNWPEK GNIQFNNVQV NYNSNSVPSL KDITFSVESN EKIGIVGRTG1140
 1141 AGKSTIANCL FRLVECSKGS ILIDGIDIKT IDLNKLRGSL GIVPQEPWLF SGTIRSNIDP1200
 1201 LNQYDDEMIW NYLEMVKLKK LIIEMPLKLN SKIHENGNTT LSYGQKQLLC LCRCLIKNPK1260
 1261 LIIMDEATSS VDFQTAETIK SVINENLVNN TILTIAHRLD IIIDSDKIAV IDNSKLIEFE1320
 1321 NPKNLINSNS KFRKIVNFQT KIQTN